From 4459415ea9d18c5ec82d71157be221cf3b7c2a51 Mon Sep 17 00:00:00 2001 From: Sam Perry Date: Fri, 25 Jan 2019 17:10:18 +0000 Subject: [PATCH] Fixed bug with EEG matrix training backup --- click_test_thread.py | 4 +- da_test_thread.py | 23 ++----- eeg_mat_train_thread.py | 6 +- templates/da_test_run.html | 4 +- templates/eeg_mat_train_clinician_view.html | 2 +- templates/eeg_mat_train_end.html | 9 +++ templates/eeg_story_train_end.html | 9 +++ templates/pta.html | 70 +++++++++++++++++++++ templates/tympanometry.html | 47 ++++++++++++++ test_base.py | 4 -- 10 files changed, 150 insertions(+), 28 deletions(-) create mode 100755 templates/eeg_mat_train_end.html create mode 100755 templates/eeg_story_train_end.html create mode 100644 templates/pta.html create mode 100644 templates/tympanometry.html diff --git a/click_test_thread.py b/click_test_thread.py index 3c1ef96..7693361 100644 --- a/click_test_thread.py +++ b/click_test_thread.py @@ -66,16 +66,18 @@ class ClickTestThread(BaseThread): self.waitForPageLoad() self.socketio.emit('test_ready', namespace='/main') for self.trial_ind in range(self.trial_ind, self.nTrials): + self.saveState(out=self.backupFilepath) self.displayInstructions() self.waitForPartReady() if self._stopevent.isSet() or self.finishTest: break # Play concatenated matrix sentences at set SNR self.playStimulusWav(self.wav_file) - self.saveState(out=self.backupFilepath) + self.saveState(out=self.backupFilepath) if not self._stopevent.isSet(): self.unsetPageLoaded() self.socketio.emit('processing-complete', namespace='/main') + self.waitForPageLoad() self.waitForFinalise() diff --git a/da_test_thread.py b/da_test_thread.py index 10aefa6..c384e7b 100644 --- a/da_test_thread.py +++ b/da_test_thread.py @@ -67,7 +67,7 @@ class DaTestThread(BaseThread): socketio=socketio, participant=participant) - self.toSave = ['trial_ind', 'nTrials', 'wav_file', 'test_name', 'si'] + self.toSave = ['stim_paths', 'trial_ind', 'nTrials', 'wav_file', 'test_name', 'si'] self.socketio.on_event('finalise_results', self.finaliseResults, namespace='/main') @@ -80,39 +80,28 @@ class DaTestThread(BaseThread): ''' self.waitForPageLoad() self.socketio.emit('test_ready', namespace='/main') + set_trace() for wav in self.stim_paths[self.trial_ind:]: + self.saveState(out=self.backupFilepath) self.displayInstructions() self.waitForPartReady() if self._stopevent.isSet() or self.finishTest: break # Play concatenated matrix sentences at set SNR - self.playStimulus(wav) + self.playStimulusWav(wav) + self.trial_ind += 1 self.saveState(out=self.backupFilepath) if not self._stopevent.isSet(): self.unsetPageLoaded() self.socketio.emit('processing-complete', namespace='/main') self.waitForPageLoad() + self.waitForFinalise() def displayInstructions(self): self.socketio.emit('display_instructions', namespace='/main') - def playStimulus(self, wav_file, replay=False): - self.newResp = False - self.socketio.emit("stim_playing", namespace="/main") - # if not replay: - # self.y = self.generateTrial(self.snr) - # Play audio - # sd.play(self.y, self.fs, blocking=True) - if not self.dev_mode: - self.play_wav(wav_file, 'finish_test') - else: - self.play_wav('./test.wav', 'finish_test') - - self.socketio.emit("stim_done", namespace="/main") - - def loadStimulus(self): ''' ''' diff --git a/eeg_mat_train_thread.py b/eeg_mat_train_thread.py index 15bcc94..a869886 100644 --- a/eeg_mat_train_thread.py +++ b/eeg_mat_train_thread.py @@ -164,8 +164,8 @@ class EEGMatTrainThread(BaseThread): ) # For each stimulus trials = list(zip(self.stim_paths, self.question))[self.trial_ind:] - set_trace() for (wav, q) in trials: + self.saveState(out=self.backupFilepath) self.displayInstructions() self.waitForPartReady() if self._stopevent.isSet() or self.finishTest: @@ -174,12 +174,12 @@ class EEGMatTrainThread(BaseThread): self.playStimulus(wav) self.setMatrix(q) self.saveState(out=self.backupFilepath) - self.finaliseResults() if not self._stopevent.isSet(): self.unsetPageLoaded() self.socketio.emit('processing-complete', namespace='/main') self.waitForPageLoad() self.fillTable() + self.waitForFinalise() def displayInstructions(self): self.socketio.emit( @@ -192,7 +192,7 @@ class EEGMatTrainThread(BaseThread): ''' ''' symb = [[symb_dict[x], symb_dict[y]] for x, y in self.answers if not np.isnan([x, y]).any()] - self.socketio.emit('test_fill_table', {'data': symb}, namespace='/main') + self.socketio.emit('eeg_test_fill_table', {'data': symb}, namespace='/main') def setMatrix(self, questions): diff --git a/templates/da_test_run.html b/templates/da_test_run.html index 7e61743..95a1b7e 100644 --- a/templates/da_test_run.html +++ b/templates/da_test_run.html @@ -63,11 +63,11 @@ waitingDialog.hide(); }); - socket.on('stim_playing', function(msg) { + socket.on('da_test_stim_playing', function(msg) { on() }); - socket.on('stim_done', function(msg) { + socket.on('da_test_stim_done', function(msg) { off() }); diff --git a/templates/eeg_mat_train_clinician_view.html b/templates/eeg_mat_train_clinician_view.html index 4754d6d..5cb5efe 100644 --- a/templates/eeg_mat_train_clinician_view.html +++ b/templates/eeg_mat_train_clinician_view.html @@ -47,7 +47,7 @@ // Check if matrix stimulus is currently being processed waitingDialog.show('Generating stimulus'); - socket.on('test_fill_table', function(msg) { + socket.on('eeg_test_fill_table', function(msg) { for(i = 0; i < msg['data'].length; i++) { for(j = 0; j < msg['data'][i].length; j++) { $(`#Q${j+1} > .T${i+1}`).text(String.fromCharCode(msg['data'][i][j])); diff --git a/templates/eeg_mat_train_end.html b/templates/eeg_mat_train_end.html new file mode 100755 index 0000000..b2f7d25 --- /dev/null +++ b/templates/eeg_mat_train_end.html @@ -0,0 +1,9 @@ +{% extends 'participant_index.html' %} +{% block content %} +
+
+

Test complete!

+

Please wait for the experimenter to give further instructions...

+
+
+{% endblock %} diff --git a/templates/eeg_story_train_end.html b/templates/eeg_story_train_end.html new file mode 100755 index 0000000..b2f7d25 --- /dev/null +++ b/templates/eeg_story_train_end.html @@ -0,0 +1,9 @@ +{% extends 'participant_index.html' %} +{% block content %} +
+
+

Test complete!

+

Please wait for the experimenter to give further instructions...

+
+
+{% endblock %} diff --git a/templates/pta.html b/templates/pta.html new file mode 100644 index 0000000..cd8f1bb --- /dev/null +++ b/templates/pta.html @@ -0,0 +1,70 @@ +{% extends 'index.html' %} +{% block content %} +
+
+

You will need:

+
    +
  • Hand gel
    • +
  • PTA form
    • +
  • Otoscope
    • +
  • Otoscope tips
    • +
+ +

Procedure:

+
    +
  1. Perform otoscopy, checking in particular for redness or bulging + tympanic membrane
    2. +
  2. Questions to ask: +
      +
    • Has the participant experienced discomfort, pain or discharge + in either ear?
      • +
    • Are they currently being + treated for any ear-related problems
      • +
    • Have they previously had surgery involving the ears
      • +
    • Have they been exposed to any loud noises in the last 24 hours?
      • +
    • Do they experience tinnitus?
      • +
    • Do they hear better from a particular ear? (start with that one)
      • +
    +
    3. +
  3. Explain and demonstrate procedure +
      +
    • "I will insert a probe into the opening of your ear + canal. The probe has a soft tip to seal the ear. You + will feel some pressure in your ear for a few seconds + while I measure the function of your middle ear. This + test is automatic and I do not require you to do + anything, but please avoid any unnecessary movement and + avoid speaking or swallowing after the probe has been + inserted. Should you find the procedure painful and + want me to stop, please indicate this by either saying + "stop" or by raising your hand."
      • +
    • Tones may be heard in either ear
      • +
    • Instruct participant to report any discomfort or + pain experienced during the examination
      • +
    • If needed the test can be stopped at any time
      • +
    +
    4. +
  4. Perform air coduction procedure +
      +
    • Freq. order: 1000, 2000, 4000, 8000, 500, 250, 1000 (again)
      • +
    • Decrease by 10dB until no response, increase by 5 dB until response
      • +
    • When subject responds to 2/3, 3/4 (>50%), take this as the threshold
      • +
    +
    5. +
  5. Perform bone coduction procedure +
      +
    • Place bone conductor over the worse ear (based on AC results)
      • +
    • Occlude test ear with headphones
      • +
    • Freq. order: 1000, 2000, 4000, 500
      • +
    • Decrease by 10dB until no response, increase by 5 dB until response
      • +
    • When subject responds to 2/3, 3/4 (>50%), take this as the threshold
      • +
    +
    6. +
+
+ + +
+
+{% endblock %} diff --git a/templates/tympanometry.html b/templates/tympanometry.html new file mode 100644 index 0000000..f208264 --- /dev/null +++ b/templates/tympanometry.html @@ -0,0 +1,47 @@ +{% extends 'index.html' %} +{% block content %} +
+
+

You will need:

+
    +
  • Hand gel
    • +
  • Typanometer
    • +
  • Otoscope
    • +
  • Otoscope tips
    • +
+ +

Procedure:

+
    +
  1. Questions to ask: +
      +
    +
    2. +
  2. Explain and demonstrate procedure +
      +
    • "I am going to test your hearing by measuring the + quietest sounds that you can hear. As soon as you hear + a sound (tone), press the button. Keep it pressed for + as long as you hear the sound (tone), no matter which + ear you hear it in. Release the button as soon as you + no longer hear the sound (tone). Whatever the sound, + and no matter how faint the sound, press the button as + soon as you think you hear it, and release it as soon + as you think it stops."
      • +
    • Tones may be heard in either ear
      • +
    • Instruct participant to report any discomfort or + pain experienced during the examination
      • +
    • If needed the test can be stopped at any time
      • +
    +
    3. +
  3. Perform procedure +
      +
    • Freq. order: 1000, 2000, 4000, 8000, 500, 250, 1000 (again)
      • +
    • Decrease by 10dB until no response, increase by 5 dB until response
      • +
    • When subject responds to 2/3, 3/4 (>50%), take this as the threshold
      • +
    +
    4. +
+ +
+
+{% endblock %} diff --git a/test_base.py b/test_base.py index dbcb6c6..17ba7fb 100644 --- a/test_base.py +++ b/test_base.py @@ -153,9 +153,6 @@ class BaseThread(Thread): Wait for results to be finalised by socketio handler ''' while not self.finalised and not self._stopevent.isSet() and not self.finishTest: - print("self.finalised {}".format(self.finalised)) - print("self.finishTest {}".format(self.finishTest)) - print("self._stopevent {}".format(self._stopevent)) self._stopevent.wait(0.2) self.socketio.emit("test_finished", namespace='/main') return @@ -262,7 +259,6 @@ class BaseThread(Thread): previously generated pickle file ''' filepath = msg['data'] - set_trace() self.loadState(filepath)