Added make portable to repo

da_stim/plot_noise_profiles.py

@@ -49,7 +49,7 @@ plt.semilogy(f, Pxx_den)
 f, Pxx_den = signal.welch(da_x[:, 1], da_fs, nperseg=1024)
 plt.semilogy(f, Pxx_den)
 plt.xlabel('frequency [Hz]')
-plt.ylabel('PSD [V**2/Hz]')
+plt.ylabel('PSD [I**2/Hz]')
 plt.xlim([0, 10000])
 plt.legend(['Pink noise', 'Speech shaped noise', 'Da'])
 plt.savefig('./test.png')

make_portable.py

@@ -0,0 +1,55 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+import dill
+import numpy as np
+import argparse
+from pathtype import PathType
+import sys
+import os
+from loggerops import create_logger
+
+def main(args):
+    file = args.data_file
+    with open(file, 'rb') as pkl:
+        a = dill.load(pkl)
+    del a['participant']
+    np.save(os.path.basename(file)+'-new.npy', a)
+
+if __name__ == '__main__':
+    #peak_pick_test()
+    parser = argparse.ArgumentParser(
+        description='Script for removing BPLabs sepcific objects from participant data'
+    )
+    parser.add_argument(
+        dest='data_file', type=PathType(),
+        help='Configuration file for processing BDF', metavar='CONFIGFILE'
+    )
+    parser.add_argument(
+        '--verbose',
+        '-v',
+        action='count',
+        help='Specifies level of verbosity in output. For example: \'-vvvvv\' '
+        'will output all information. \'-v\' will output minimal information. '
+    )
+    args = parser.parse_args()
+
+    # Set verbosity of logger output based on argument
+    if not args.verbose:
+        args.verbose = 10
+    else:
+        levels = [50, 40, 30, 20, 10]
+        if args.verbose > 5:
+            args.verbose = 5
+        args.verbose -= 1
+        args.verbose = levels[args.verbose]
+
+    # Define path to module for storing log files
+    modpath = sys.argv[0]
+    modpath = os.path.splitext(modpath)[0]+'.log'
+
+    logger = create_logger(
+        logger_streamlevel=args.verbose,
+        log_filename=modpath,
+        logger_filelevel=args.verbose
+    )
+    main(args)