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ENH: Use newer Qt (#5328)

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This commit is contained in:
Eric Larson
2018-07-11 13:44:00 -04:00
committed by GitHub
parent 9b3883d4af
commit 001e5c84dc
1 changed files with 39 additions and 19 deletions
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.circleci/config.yml
+39 -19
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@@ -1,8 +1,11 @@
# Tagging a commit with [circle front] will build the front page and perform test-doc.
# Tagging a commit with [circle full] will build everything.
version: 2
jobs:
build:
docker:
- image: circleci/python:3.6-stretch
# 3.6-jessie is too new for conda
- image: circleci/python:3.6-jessie
steps:
# Get our data and merge with upstream
- checkout
@@ -19,27 +22,44 @@ jobs:
- restore_cache:
keys:
- data-cache
- pip-cache
# Get latest Anaconda running
# Spin up Xvfb
- run: /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1400x900x24 -ac +extension GLX +render -noreset;
- run: echo "export DISPLAY=:99" >> $BASH_ENV;
# Fix libgcc_s.so.1 pthread_cancel bug:
# https://github.com/ContinuumIO/anaconda-issues/issues/9190#issuecomment-386508136
- run: sudo apt-get install libgl1-mesa-glx libegl1-mesa libxrandr2 libxrandr2 libxss1 libxcursor1 libxcomposite1 libasound2 libxi6 libxtst6
- run: echo "export DISPLAY=:99" >> $BASH_ENV
- run: echo "export PATH=~/miniconda/envs/mne/bin:~/miniconda/bin:$PATH" >> $BASH_ENV
- run: /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1400x900x24 -ac +extension GLX +render -noreset;
# https://github.com/golemfactory/golem/issues/1019
- run: sudo apt-get install libgl1-mesa-glx libegl1-mesa libxrandr2 libxrandr2 libxss1 libxcursor1 libxcomposite1 libasound2 libxi6 libxtst6 qt5-default
# Get latest Anaconda running
- run:
command: |
wget -q http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O ~/miniconda.sh;
chmod +x ~/miniconda.sh;
~/miniconda.sh -b -p ~/miniconda;
echo "export PATH=~/miniconda/bin:$PATH" >> $BASH_ENV;
- run:
command: |
conda update --yes --quiet conda;
conda env create --quiet -f environment.yml;
source activate mne;
pip uninstall --yes mne;
echo "source activate mne" >> $BASH_ENV;
- save_cache:
key: pip-cache
paths:
- ~/.cache/pip
# The conda-provided PyQt5 does not work on CircleCI for some reason,
# possibly because the libGL expects a sufficiently modern libgcc
# and conda rolls their own (libgcc-ng package).
- run: conda remove --yes qt pyqt matplotlib sip libxcb icu vtk
- run: pip uninstall --yes mayavi vtk
- run: pip install vtk mayavi PyQt5 PyQt5-sip sip matplotlib
- run: echo "export LD_PRELOAD=~/miniconda/envs/mne/lib/libgobject-2.0.so.0.5600.1" >> $BASH_ENV
# Look at what we have and fail early if there is some library conflict
- run: which python
- run: python -c "import mne; mne.sys_info()"
- run: python -c "from mayavi import mlab; import matplotlib.pyplot as plt; mlab.figure(); plt.figure()"
- run: LIBGL_DEBUG=verbose python -c "from mayavi import mlab; import matplotlib.pyplot as plt; mlab.figure(); plt.figure()"
- run: python -c "import mne; mne.set_config('MNE_LOGGING_LEVEL', 'info')"
- run: python -c "import mne; level = mne.get_config('MNE_LOGGING_LEVEL'); assert level.lower() == 'info', repr(level)"
@@ -51,6 +71,7 @@ jobs:
- run: mkdir -p ~/mne_data
- run:
command: |
touch pattern.txt;
if [ "$CIRCLE_BRANCH" == "master" ] || [[ $(cat gitlog.txt) == *"[circle full]"* ]]; then
echo html_dev > build.txt;
elif [ "$CIRCLE_BRANCH" == "maint/0.16" ]; then
@@ -58,7 +79,8 @@ jobs:
else
FNAMES=$(git diff --name-only $CIRCLE_BRANCH $(git merge-base $CIRCLE_BRANCH upstream/master));
if [[ $(cat gitlog.txt) == *"[circle front]"* ]]; then
FNAMES="plot_mne_dspm_source_localization.py plot_receptive_field.py plot_mne_inverse_label_connectivity.py plot_sensors_decoding.py plot_stats_cluster_spatio_temporal.py plot_visualize_evoked.py "${FNAMES};
FNAMES="tutorials/plot_mne_dspm_source_localization.py tutorials/plot_receptive_field.py examples/connectivity/plot_mne_inverse_label_connectivity.py tutorials/plot_sensors_decoding.py tutorials/plot_stats_cluster_spatio_temporal.py tutorials/plot_visualize_evoked.py "${FNAMES};
python -c "import mne; print(mne.datasets.testing.data_path(update_path=True))";
fi;
echo FNAMES="$FNAMES";
for FNAME in $FNAMES; do
@@ -124,7 +146,6 @@ jobs:
fi;
done;
echo PATTERN="$PATTERN";
echo NEED_SAMPLE="$NEED_SAMPLE";
if [[ $PATTERN ]]; then
PATTERN="\(${PATTERN::-2}\)";
echo html_dev-pattern > build.txt;
@@ -133,7 +154,8 @@ jobs:
fi;
fi;
echo "$PATTERN" > pattern.txt;
- run: echo BUILD="$(cat build.txt)"
- run: echo "PATTERN=$(cat pattern.txt)"
- run: echo "BUILD=$(cat build.txt)"
- run: ls -al ~/mne_data;
- run:
command: |
@@ -141,19 +163,17 @@ jobs:
SUBJECTS_DIR=~/mne_data/MNE-sample-data/subjects python -c "import mne; mne.datasets._download_all_example_data()";
fi;
- run: if [ ! -d ~/mne-tools.github.io ]; then git clone https://github.com/mne-tools/mne-tools.github.io.git ~/mne-tools.github.io --depth=1; fi;
# Run doctest (if it's full or front) before building the docs
- run:
command: |
if [[ $(cat build.txt) == "html_dev-noplot" ]]; then
cd doc;
make html_dev-noplot;
elif [[ $(cat build.txt) == "html_dev-pattern" ]]; then
cd doc;
PATTERN=$(cat ../pattern.txt) make html_dev-pattern;
else
if [[ $(cat gitlog.txt) == *"[circle front]"* ]] || [[ $(cat build.txt) == "html_dev" ]] || [[ $(cat build.txt) == "html_stable" ]]; then
make test-doc;
cd doc;
make $(cat ../build.txt);
fi;
# Build docs
- run:
command: |
cd doc;
PATTERN=$(cat ../pattern.txt) make $(cat ../build.txt);
- run: python -c "import mne; level = mne.get_config('MNE_LOGGING_LEVEL'); assert level.lower() == 'info', repr(level)"
- store_artifacts: