97 Commits

Author SHA1 Message Date
Alexandre Gramfort 5d1fc7af73 Cleanup manifest (#4387)
* attempt to clean manifest

* cleanup manifest

* use same order in setup and manifest

* fix

* more

* more
2017-07-17 19:21:09 +02:00
Eric Larson a1f3b8f2b5 ENH: Just use setuptools 2017-02-13 16:48:41 -05:00
Luke Bloy e58701054f [MRG+1]: IO support for artemis123 (#3754)
* ENH: Initial commit with structure of reader. Not Working

* ENH: artemis IO reads artemis HEADER still not meas info

* ENH:Added utilitie functions for converting coil locations to mne loc structures

* ENG: working reader needs Testing (at a minimum units are wrong)

* FIX: coil locations look correct in plotting

* FIX: refactor testdataset into MNE-testing-data

* FIX:updated to testing release 0.27

* FIX: remove camelCase functions and variables - plus other requests from @Eric89GXL code review

* FIX:make pep and flake8 happy

* add resource csv to install

* FIX:make docstrings happy

* FIX: Updated reference channel locations/coildefinitions

* FIX: added test for utils

* DOC: added artemis support to whats new

* ENG: refactored rotation code into mne/transforms.py

* DOC: add artemis 123 to plot_meg_sensors example

* FIX: other minor fixes suggested by @Eric89GXL

* Fix : throw parsing Exception on bad header lines

* FIX:Fixed utils test

* FIX: added some meas_info meta data (subj etc). Warn on encountering unsupported header options

* FIX: add edge case to mne.transforms.rotation3d_align_z_axis

* FIX: style etc

* FIX: used assert_all_close as opposed to assert_equal

* updated to new Artemis coil IDs

* FIX: use refactored BaseRaw as oppoesed to _BaseRaw

* Fix: incorporate UNIT_MUL into channel scaling factor

* Fix: Minor fixes

* FIX: Mostly style changes

* FIX: Style and Gradiometer unit comment
2016-12-06 10:52:25 -05:00
Eric Larson e5ce0cf171 MRG: Dont force IPython version (#3763)
* FIX: Dont force IPython version

* FIX: Auto-populate setup

* FIX: Docstring
2016-11-12 09:32:13 +01:00
Eric Larson c44781dc96 MRG: Add subject warping (#3613)
* WIP: Add spherical harmonic transformations
2016-10-18 09:29:16 +02:00
Jussi Nurminen 577d5fa2f2 MRG+1: Elekta averager (#3205)
* wip: add elekta averager

* wip: Elekta averager [ci skip]

* wip: fix import and staticmethods [ci skip]

* pep8 ok

* wip: passes flake8

* wip: get onsets and offsets, clean repr

* wip: beautify repr and docstrings [ci skip]

* wip: further beautify [ci skip]

* wip: tests, refactor [ci skip]

* wip: fix indexing [ci skip]

* wip: test for no acq params [ci skip]

* wip: print event more nicely [ci skip]

* wip: unit test

* wip: comment [ci skip]

* wip: test for dacq <3.4

* wip: update location of test data [ci skip]

* wip: some renames + refactor [ci skip]

* wip: start class->dict refactor [ci skip]

* wip: refactor classes away [ci skip]

* wip: refactored [ci skip]

* wip: cleanup

* wip: some cleanup [ci skip]

* wip: further cleanup [ci skip]

* wip: take info as arg [ci skip]

* wip: use dicts instead of lists

* wip: tentative example [ci skip]

* wip: don't copy undefined rejection limits

* wip: specify event by name, fat docstring, flats

* wip: some comments

* wip: docstring + typo

* wip: linefeeds into repr

* wip: most of kingjr review

* wip: hide variable lists [ci skip]

* wip: small naming fix [ci skip]

* try STI101 first, then STI 014

* Revert "try STI101 first, then STI 014"

This reverts commit 58225fdbf4e33b0d32df5b706a9424f9f9d6f14a.

* wip: fix some indents

* wip: rm unneeded property [ci skip]

* wip: rm parent attribute [ci skip]

* wip: get cats/events in use dynamically [ci skip]

* example: modify averaging parameters

* enhanced example

* add class to rst [ci skip]

* wip: rm get_epochs method, return params instead

* wip: wip [ci skip]

* wip: return conditions as list of dicts

* wip: update example comments

* minor tweak to api, doc fix, comments

* minor doc tweaks

* set shortest_event=1

* Eric comments

* docstring fix

* repr fix, rename example

* since it's full of cats anyway

* improve __getitem__, implement __len__

* docstring

* docstring fix

* return category index as event id

* conditions -> condition, fix rebase mess

* damn

* fix imports

* support for old dacq, delayed lookup

* TODO

* exception for messy trigger data

* small comment fixes [ci skip]

* ElektaAverager -> AcqParserFIF [ci skip]

* helper methods inside class [ci skip]

* doc fixes, fix broken example

* include multimodal dataset

* rename

* add multimodal to setup.py

* rm empty line

* fine tune example

* create new avg category from scratch

* add whatsnew line and fix typo on previous line

* docs for len and getitem, getitem enh.

* add multimodal to download_all

* wip: tests

* wip: tests

* more tests

* small glitches

* couple more tests + checks

* tests on older file

* minor doc tweaks

* tweak example comments
2016-09-24 22:05:32 +02:00
Alexandre Gramfort 3790aefcb0 Merge pull request #2946 from jaeilepp/cnt-reader
[MRG] Reader for Neuroscan cnt files.
2016-03-17 09:45:54 +01:00
jaeilepp b412271bec Fix 2016-03-16 09:55:48 +01:00
jaeilepp 89596f96c8 Fix to setup.py. 2016-03-16 09:55:48 +01:00
jaeilepp c1330a76a0 Setup.py. Placeholder for tests. 2016-03-15 09:06:14 +01:00
Eric Larson 4b89a0472f FIX: Rename function 2016-01-24 22:41:28 -05:00
Mainak Jas e6583faa68 ENH: eeglab .set reader 2015-12-23 16:14:47 +05:30
Eric Larson ae4197a4ef ENH: CTF reading support 2015-11-26 10:01:59 +01:00
jaeilepp 3d82389ba4 Nicolet reader. 2015-11-18 15:08:58 +01:00
Christian Brodbeck ba3793c0cd FIX setup.py include GUI help *.json files 2015-10-30 21:08:19 -04:00
Eric Larson 3494f808a5 FIX: Fix packaging 2015-08-21 12:06:07 -04:00
Mainak Jas ae5c614560 Add brainstorm data to setup to fix travis 2015-08-06 15:52:01 +05:30
Denis A. Engemann f32436e9fb Merge pull request #2115 from wronk/sss_maxwell
WIP: SSS Maxwell (for GSoC)
2015-07-12 19:47:26 +02:00
wronk c4dc1fa6cb FIX: Compatibility issues for other python versions 2015-07-10 23:00:59 -07:00
Eric Larson 05223d1bae ENH: Better coverage 2015-06-01 11:50:13 -07:00
Eric89GXL 2a9d5a7ddd FIX: Fix setup 2015-05-22 02:06:48 -07:00
Eric Larson 67f399c1d3 FIX: Add simple test 2015-05-10 05:36:53 -07:00
Eric Larson b9e4524c06 STY: Newer PEP8 2015-02-19 12:43:39 -08:00
dengemann 7d4e33cd3d one more attempt to fix setup.py 2014-11-09 22:25:25 +01:00
dengemann 044c63ea53 attempt to fix setup.py 2014-11-09 21:33:40 +01:00
dengemann 39d440ca44 fix setup.py 2014-11-09 18:25:18 +01:00
dengemann 5309c5398b ENH: reorganize template modules consistently
fix setup.py

edit manifest

fix attempt setup.py

more setup + py3k fixes

cleanup, add Fieldtrip credits, update reference and whats new

address suggestions from hangout

remove montages.py
2014-11-09 18:19:27 +01:00
dengemann 559ceae542 add spatio-temporal clustering example for sensor data
minor fixes

update tests to deal with preload when dropping channels

cleanup

cleanup2

cleanup viz
2014-11-09 18:16:53 +01:00
Marijn van Vliet 3488cb2bd2 Added montages to setup 2014-10-31 10:46:04 +01:00
dengemann 973cdc69fb fix setup.py 2014-10-31 10:46:03 +01:00
Eric89GXL 256fc7a404 FIX: Add LUT to data 2014-09-23 11:27:31 -07:00
Eric Larson 9bd00d3e52 ENH: Improve multiple tests 2014-09-23 11:27:31 -07:00
Eric Larson cce5d7837d ENH: Smaller test dataset (150MB) 2014-09-23 11:27:30 -07:00
Eric Larson 5a7d2eed1e FIX: Fix setup.py 2014-08-26 11:47:19 -07:00
Alexandre Gramfort 150d47cbaf deprecations for v0.9 2014-08-20 14:37:30 +02:00
Mainak Jas 59a6f24c4b FIX: add tempita to setup 2014-07-19 14:17:41 +02:00
Mainak Jas 51c9d5a0dc FIX: Make Travis happy by updating setup.py 2014-07-19 14:17:39 +02:00
Alexandre Gramfort 1d3a663f80 update setup.py 2014-07-14 22:22:45 +02:00
Alexandre Gramfort 1021e2e1da ENH : add somato dataset 2014-07-12 23:03:24 +02:00
Eric Larson 1a9fdb12bb FIX: Fix email 2014-07-10 08:41:31 -07:00
Martin Billinger 754c64fdca added eegbci dataset to installer 2014-06-14 16:33:12 +02:00
Eric Larson 58c88e247d FIX: Fix setup 2014-05-09 17:07:21 -07:00
Alexandre Gramfort d5b5496cab API : add deprecation 2014-05-09 17:07:05 -07:00
Eric Larson b67c3d57eb FIX: Fix name and tests 2014-04-29 11:52:49 -07:00
Eric Larson 47b35f4418 ENH: Add custom data use 2014-04-28 16:35:14 -07:00
Eric Larson 67def3a19f FIX: Fix location of base.py 2014-04-15 09:48:32 -07:00
dengemann 2d9614cf9b address discussion 2014-04-12 22:51:37 +02:00
Eric Larson 201e37597f WIP: Add mapping 2013-12-21 18:08:52 +01:00
Eric Larson 97b79ee4d6 FIX: Better raw support 2013-12-12 18:20:04 +01:00
Alexandre Gramfort 2ac025eebd udpate setup.py 2013-12-09 09:38:26 +01:00