012b02bf40
bug overwritting params in _get_matrix_from_inverse_operator for PSF/CTF ( #5393 )
2018-08-04 12:26:08 +02:00
3d08007b75
Add support for offsets for arbitrary BrainVision marker types ( #5391 )
...
* add trig_shift_by_type parameter for read_raw_brainvision and deprecate response_trig_shift
* change formatting for docs
2018-08-03 22:30:25 +02:00
b9c712b237
[MRG] use set_annotations method for Raw objects ( #4870 )
2018-08-03 16:28:39 +02:00
83e16e22b7
fix CTF MNE/dSPM due to comps ( #5388 )
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* fix CTF MNE/dSPM due to comps
* simplify test
2018-08-03 15:19:19 +02:00
e60cc0ab0b
Use src to create stc in beamformer code ( #5317 )
...
* use src to make stc in lcmv
* use src to make stc in dics
* storing src in filters for dics
* add src tests to lcmv
* rewrite tests to reflect changes in testing policy
* use already existing apply_lcmv for src test
* add test for dics
* update and fix docstrings
* change lcmv filters to only store src_type
* allow src_type as input to _make_stc
* adjust test for src to be test for src_type
* fix docstring
* exchange src with src_type in _make_stc
* adjust DICS to changes in _make_stc
* adjust DICS, iteration II
* pep8 fix
* adjust DICS test for filters
* adjust inverse.py to passing src_type instead of src
* fix _make_stc
* handle src_type being None
* add src_type as none if not in filter (lcmv)
* add src type as None if not in filters (dics)
* adapt tests for lcmv
* adapt dics tests
* fix docs / comments
* add flexible warning to _get_src_type
* add function for checking filters and warning message
* refactor lcmv and dics for filters and warning
* update emitted warning
* update tests lcmv
* adjust dics tests
* fix handling of dict
* fix dict handling, part II
2018-08-03 14:58:35 +02:00
19a4428266
ENH : add replace param in raw.add_events ( #5386 )
2018-08-02 16:22:27 +02:00
609515033e
MRG: Fix check for avg ref ( #5385 )
...
* FIX: Fix check for avg ref
* FIX: Fix comps check
2018-08-01 13:33:44 +02:00
52c432908a
MRG: Fix resizing ( #5378 )
...
* FIX: Fix resizing
* FIX: One more
2018-08-01 13:26:31 +02:00
5179d6c809
MRG: Fix sphere model fitting ( #5381 )
...
* FIX: Fix sphere model fitting
* FIX: Revert cons for old scipy
2018-08-01 09:00:27 +02:00
0af60b0598
Allow empty vlines in plot_compare_evokeds ( #5376 )
...
* init
* pep8
2018-07-31 20:21:40 -04:00
16feb1ae3c
MRG+1: Use read_mat for eeglab ( #5326 )
...
* ENH: Use read_mat
* FIX: Working
* FIX: Reorganize tests for speed
* FIX: Decs and nest
* FIX: Flake
* FIX: Fix for old pytest
* FIX: Nest imports
* FIX: Update
* DOC: whats_new.rst
2018-07-31 08:17:16 -04:00
fdba42d361
ENH: Add desc_prefix ( #5371 )
2018-07-28 08:29:22 +02:00
575164175b
Merge pull request #5340 from massich/add_contributing_guide
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[MRG] Add Contributing guide
2018-07-27 20:40:39 +02:00
938ff86227
Add contributing to manifest
2018-07-27 18:20:43 +02:00
b5e3770efb
Move CONTRIBUTING.md to root
2018-07-27 18:18:48 +02:00
d26171dfab
wording
2018-07-27 18:18:48 +02:00
825a92337a
Contributing.md draft
2018-07-27 18:18:48 +02:00
9358407481
updated external pymatreader to version 0.0.9. this fixes a bug that was discovered by @larsoner that prevented the proper loading of EEGLAB set files. ( #5367 )
2018-07-26 10:42:19 -04:00
7e0e988b6e
Merge pull request #5361 from sappelhoff/fix_meas_date_brainVision
...
read meas_date from BrainVision vmrk
2018-07-25 15:42:25 +02:00
b3f6182ae5
work regexp on stripped line
2018-07-25 12:59:00 +02:00
adb0897099
use meas_date unspecified in repr and test it
2018-07-25 11:07:57 +02:00
c37d2c10f9
make regex more specific
2018-07-25 10:56:18 +02:00
d109dd8d43
MRG: Fix Travis ( #5363 )
...
* FIX: Fix Travis
* FIX: Flake
2018-07-24 23:24:45 -04:00
8bccec4977
MRG: Fix linkcode ( #5350 )
...
* FIX: Fix linkcode
* FIX: Fix linkcode
* FIX: Fix warning
* FIX: Minor fix
* FIX: Fix for windows
* FIX: Fix for Python2
2018-07-24 16:55:08 -04:00
8d006f72f6
fix bugs, use math.modf now
2018-07-24 18:57:36 +02:00
69ae9598d0
use for-else loop
2018-07-24 16:52:18 +02:00
603c29d072
use for-else loop
2018-07-24 16:51:30 +02:00
017a36325b
corrected meas_date, and doc, and added test for repr()
2018-07-24 16:46:59 +02:00
90d963ef04
break loop early, use proper time formatting
2018-07-24 15:56:48 +02:00
c3ee98337b
read meas_date from BrainVision vmrk
2018-07-24 11:57:29 +02:00
241161d00d
MRG: Fix fwd with surf + discrete ( #5354 )
...
* FIX: Fix fwd with surf + discrete
* STY: docstring
2018-07-20 21:19:56 +02:00
1aea53a5e7
[MRG+1] CTF support for ds bad channels and bad segments ( #5255 )
...
* CTF support for ds bad channels and bad segments
2018-07-20 10:20:45 +02:00
e39e1f04cd
FIX: Verbose ( #5352 )
2018-07-19 09:35:48 +02:00
5389a456c4
ENH: Speed up a couple of tests ( #5348 )
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* ENH: Speed up a couple of tests
* FIX: Combine runs
2018-07-18 13:49:05 -04:00
512fafcf40
[MRG] FIX (and test) scale_source_space() for uniform scaling ( #5344 )
...
* TEST scale fsaverage with uniform scaling
* FIX scale_source_space() for uniform scaling
2018-07-17 09:18:13 -04:00
a75970522e
MRG: Rename buffer_size_sec ( #5343 )
...
* FIX: Rename buffer_size_sec properly
* FIX: Fix test
2018-07-16 16:39:01 -04:00
52b94b1713
FIX: Dec
2018-07-16 16:07:01 -04:00
1cedd32abe
WIP : fix CTF lcmv due to comps ( #5341 )
...
* ugly hack
* add test
* flake8 + add XXX + update what's new
2018-07-16 21:50:05 +02:00
039cb1bf52
MRG: Add pip requirements.txt and Travis runs ( #5251 )
...
* ENH: Test pip
* FIX: Bash
* FIX: More bash plus xdist
* FIX: Tweak
* FIX: ?
* FIX: Qt
* FIX: Remove Travis NumPy
* FIX: Mayavi req numpy
* FIX: Requirements
* FIX: Local fixes
* FIX: Speed up more
* FIX: Remove unneeded option
* ENH: Speed up CTF reading by using structured arrays
* ENH: Speed up beamforming tests
* FIX: Uncomment
* WIP: Use an extra split to get it to pass
* FIX: CTF
* FIX: Speed up?
* FIX: Fix Travis
* FIX: Dipole
* FIX: No skips
* FIX: Switch from sample to testing
2018-07-13 14:42:07 +02:00
1f70786a6b
[MRG+1] Clarify statistics background ( #5316 )
...
* First section
* Subsection "Non-parametric tests" done
* Start with multiple comparisons
* Everything up to Clustering
* Address Jonas's comments
* Add average data for illustration
* Make the average data part of the narrative
* Clarify why the absolute value of the statistic is used (two-tailed test)
* Use p=0.1 as limit to show "non-sigificant" values (i.e. p > 0.05) in black
* Clarify non-parametric test with maximum statistic
* Clarify construction of connectivity matrix
* Fix summary figure
* More minor things
* Move URL targets into corresponding blocks
* FIX: Links
* Try outsourcing links to .inc file
* Try again
* Fix include
* Cosmetics
* Finishing touches (make all tests 2-tailed, improve explanation of clustering, cosmetics)
* Use different random seed, improve wording.
2018-07-12 14:04:56 +02:00
486c0638d8
FIX: Fix check
2018-07-11 19:53:50 -04:00
9af6fa422d
MRG allow passing axes to evoked.plot_joint ( #5263 )
...
* init
* tests
* pep8
* FIX: whats_new.rst
2018-07-11 15:21:57 -04:00
001e5c84dc
ENH: Use newer Qt ( #5328 )
2018-07-11 13:44:00 -04:00
9b3883d4af
Remove unused code after deprecation ( #5331 )
2018-07-10 15:53:21 +02:00
4df573c93f
FIX: Fix add_channels behavior ( #5327 )
2018-07-10 14:53:08 +02:00
3022961cef
ENH: Add ARTEMIS123 helmet ( #5272 )
2018-07-09 10:01:10 -04:00
1264cc711b
Add PyQt5-sip (required for PyQt5 >= 5.11) ( #5322 )
...
* Add PyQt5-sip (required for PyQt5 >= 5.11)
* FIX: Try libxss1 (from conda issue)
* FIX?
* Try removing --no-deps in pip install command
* Don't pip upgrade PyQt5 (but use conda package)
2018-07-09 09:51:31 -04:00
f2fcc5aec0
attempt to fix interpolation of bad MEG sensors with applied compensation ( #5321 )
...
* attempt to fix interpolation of bad MEG sensors with applied compenstation.
* do not include comps in interpolation
* update what's new
* put back ref meg
2018-07-09 09:48:21 +02:00
1442cc4b8c
MRG: Modernize testing ( #5308 )
...
* ENH: Modernize tests
* FIX: Fix for newer traits
* FIX: Looser Subplot type check
* FIX: Fix docstring check
* FIX: Spelling
* FIX: Makefile
2018-07-06 16:18:33 +02:00
a44caaa3a5
Add nanovolts to allowed units in brainvision files ( #5298 )
...
* Add nanovolts to allowed units in brainvision files
2018-07-06 14:21:33 +02:00
Alexandre Gramfort